总结性特征

doi:10.18129/b9.bioc.summarizedExperiment

这是发展Summariedexperiment的版本;对于稳定版本,请参阅总结性特征

汇总experiment容器

生物导体版本:开发(3.13)

汇总experiment容器包含一个或多个测定法,每个测定都由数字或其他模式的矩阵状对象表示。行通常代表感兴趣的基因组范围,列代表样本。

作者:马丁·摩根(Martin Morgan),Valerie Obenchain,Jim Hester,HervéPagès

维护者:bioconductor.org>的生物导体套件维护器<维护器>

引用(从r内,输入引用(“总结性特征”)):

安装

要安装此软件包,请启动R(版本“ 4.1”)并输入:

if(!sireseenamespace(“ Biocmanager”,悄悄= true))install.packages(“ biocmanager”)#以下初始化了Bioc Devel Biocmanager :: Install(version = deS ='devel')biocmanager :: install(“ SummarizedExperiment”)

对于R的较旧版本,请参考适当的生物导体释放

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

browsevignettes(“总结性特征”)

html R脚本 1.总结了协调实验测定,样本和感兴趣区域的特殊性
html R脚本 2.扩展摘要的表演课
PDF 参考手册
文本 消息

细节

生物浏览 注解,,,,覆盖范围,,,,遗传学,,,,基因数,,,,基础设施,,,,测序,,,,软件
版本 1.21.1
在生物导体中 Bioc 3.2(R-3.2)(5。5年)
执照 艺术2.0
要看 R(> = 4.0.0),方法,矩阵(> = 1.1.3),基因组机(> = 1.41.5),生物酶
进口 UTIT,统计,工具,矩阵,,,,生物基因(> = 0.37.0),S4VECTORS(> = 0.27.12),iranges(> = 2.23.9),GenomeInfodB(> = 1.13.1),延迟(> = 0.15.10)
链接
建议 HDF5Array(> = 1.7.5),注释,,,,AnnotationDbi,,,,HGU95AV2.DB,,,,GenomicFeatures,,,,txdb.hsapiens.ucsc.hg19,,,,jsonlite,,,,RHDF5,,,,呼吸道,,,,生物使用,,,,尼特,,,,rmarkDown,,,,运行,,,,测试,,,,消化
系统要求
增强
URL //www.andersvercelli.com/packages/summarizedExperiment
BugReports https://github.com/bioconductor/summarizeexperiment/issues
取决于我 辅助,,,,呼吸道,,,,等位基因平衡,,,,Aspediafi,,,,小班夫,,,,BDMMACORCT,,,,Benchmarkfdrdata2019,,,,Biocsklearn,,,,Biseq,,,,BNBC,,,,Bodymaprat,,,,布拉替伯,,,,BSSEQ,,,,Cagefightr,,,,Celaref,,,,CellDex,,,,簇发酵,,,,Coseq,,,,CSAW,,,,CSSQ,,,,ctggem,,,,策展adipochip,,,,策展人,,,,达米尔塞克,,,,装饰,,,,Deepsnv,,,,demixt,,,,deseq2,,,,dexseq,,,,差异,,,,diffcoepp,,,,Diffhic,,,,发散,,,,DMCFB,,,,dmchmm,,,,dmrcate,,,,Dream4,,,,DSQTL,,,,enmix,,,,富集兄弟,,,,Epgenomix,,,,评估,,,,EventPointer,,,,Exomepeak2,,,,实验值,,,,表达,,,,裂变,,,,flowsorted.blood.epic,,,,Flowsorted.cordbloodcombined.450k,,,,弗雷泽,,,,Genogam,,,,基因组签名,,,,Genomicfiles,,,,Genoset,,,,Grmetrics,,,,GSEABENCHMARKER,,,,hdcytodata,,,,Helloranges,,,,高度复制的Rnaseq,,,,Hipathia,,,,HMP16SDATA,,,,iggenusage,,,,intad,,,,互动集,,,,兴趣,,,,我明白,,,,Isomirs,,,,春日,,,,Lefser,,,,lipidr,,,,loomexpermiment,,,,制造4,,,,mbased,,,,metagxbreast,,,,Metagxovarian,,,,metagxpancreas,,,,Methrix,,,,甲基管,,,,甲基Seqdata,,,,microRNAOME,,,,Minfi,,,,Mirmine,,,,moanin,,,,MousegastrulationData,,,,mpra,,,,多亚sayExexperiment,,,,NADFINDER,,,,nbamseq,,,,新浪潮,,,,校长,,,,帕德玛,,,,甲状旁腺,,,,profileplyr,,,,叙事,,,,ROCOUT3,,,,雷根里奇,,,,REMP,,,,安息,,,,休息,,,,Rocpai,,,,RQT,,,,runibic,,,,比例4C,,,,SCGPS,,,,烤饼,,,,SDAMS,,,,Seqgate,,,,sgseq,,,,SignaturesEarch,,,,Simulatorz,,,,Singlecellexperiment,,,,Singlecelltk,,,,辛格,,,,soggi,,,,西班牙猎狗,,,,SPQN,,,,spqndata,,,,Sracipe,,,,SSPATHS,,,,斯塔格,,,,总结,,,,幸存,,,,tidysummarizedExperiment,,,,时间赛车,,,,次级表演,,,,Tissueenrich,,,,tnbc.cms,,,,umi4cats,,,,香草,,,,变体,,,,variantexperiment,,,,Velociraptor,,,,Weitrix,,,,山药,,,,Zinbwave
进口我 亚当,,,,atimpute,,,,骨料,,,,ALDEX2,,,,高山,,,,alpsnmr,,,,动物库,,,,anota2seq,,,,apalyzer,,,,apeglm,,,,感谢,,,,ASIC,,,,Aucell,,,,基本,,,,Batchelor,,,,BAYESSPACE,,,,Baynorm,,,,BBCANALYZER,,,,bigpint,,,,Bioconcotk,,,,Biotmle,,,,Biovizbase,,,,饼干,,,,Biseq,,,,BlackSheepr,,,,BloodCancermultiomics2017,,,,Brgedata,,,,Brgenomics,,,,bumhmm,,,,buscrect,,,,凯恩,,,,卡格,,,,催化剂,,,,cbioportaldata,,,,ccfindr,,,,塞尔达,,,,细胞混蛋,,,,蜂窝轨道,,,,人口普查,,,,CETF,,,,切塔,,,,Chippeakanno,,,,染色体,,,,Chromvar,,,,Citefuse,,,,甲基化,,,,clustifyr,,,,cmapr,,,,cnvfilter,,,,cnvranger,,,,coexnet,,,,COGAPS,,,,组合,,,,carpartmap,,,,共识,,,,库务,,,,coregx,,,,畜栏,,,,宇宙67,,,,countsimqc,,,,策展,,,,Cydar,,,,Cytomapper,,,,damefinder,,,,达斯珀,,,,Debcam,,,,碎片器,,,,分解疾病,,,,Demptumor2sig,,,,变形,,,,DegReport,,,,Deltacapturec,,,,dep,,,,DESCAN2,,,,命运,,,,Dewseq,,,,diffcyt,,,,违规行为,,,,清楚的,,,,Dittoseq,,,,多米诺骨牌效应,,,,doppelgangr,,,,剂量,,,,液滴,,,,沙丘,,,,EasyRnaseq,,,,艾萨尔,,,,埃尔默,,,,ememblvep,,,,epivizrdata,,,,Erma,,,,FCBF,,,,fcscan,,,,fieldeffectcrc,,,,鱼池,,,,氟化物学,,,,加尔斯,,,,gcrisprtools,,,,遗传,,,,GenomicDataCommons,,,,getDee2,,,,GGBIO,,,,glimma,,,,Glmgampoi,,,,Glmsparsenet,,,,GNET2,,,,Gramm4r,,,,Greylistchip,,,,Gscreend,,,,GSVA,,,,Gwasurvivr,,,,格纳,,,,HMP2DATA,,,,htseqgenie,,,,人录取组成,,,,蜂鸟,,,,Iasva,,,,冰茶,,,,理想的,,,,ihwpaper,,,,伊洛格,,,,校正,,,,检查,,,,Interminer,,,,iseeu,,,,迭代,,,,蕾丝,,,,谱系,,,,Lionessr,,,,Madseq,,,,马尔,,,,桅杆,,,,mbkmeans,,,,MBQN,,,,MCSEA,,,,一顿饭,,,,,,,,MEB,,,,代谢组工厂,,,,metaneighbor,,,,metaseqr2,,,,甲基,,,,甲基分析,,,,甲基化,,,,甲基菌,,,,最小值,,,,Mirlab,,,,mirsm,,,,甲基小姐,,,,mlseq,,,,MOONLIGHTR,,,,Motifbreakr,,,,MotifMatchr,,,,mpranalyze,,,,MSGBSR,,,,MSPREP,,,,多胎,,,,多组学,,,,mumosa,,,,马斯喀特,,,,Musicatk,,,,mwastools,,,,纳米塞维兹,,,,星云,,,,NetSmooth,,,,诺斯,,,,普通剂,,,,寡群,,,,Omicrexposom,,,,Omicslonda,,,,OMICSPRINT,,,,oncomix,,,,ORFIK,,,,Oveseg,,,,配对,,,,PCAEXPLORER,,,,佩科,,,,Pharmacogx,,,,Phemd,,,,苯酚,,,,管道,,,,PMP,,,,proactiv,,,,Proda,,,,psichomics,,,,脉冲siLAC,,,,属属,,,,qfeatures,,,,QSmooth,,,,R453plus1toolbox,,,,Radiogx,,,,破烂的经历,,,,Rarevariantvis,,,,rcistarget,,,,受体,,,,地区报告,,,,regsplice,,,,RGSEPD,,,,rmmquant,,,,rnaagecalc,,,,rnasense,,,,怒吼,,,,rscudo,,,,rtcgatoolbox,,,,RTN,,,,sbgnview,,,,SC3,,,,Scarray,,,,评分,,,,SCBFA,,,,SCCB2,,,,scdblfinder,,,,SCDD,,,,SCDS,,,,Schot,,,,scmap,,,,Scmerge,,,,Scmeth,,,,scnorm,,,,Scoreinvhap,,,,SCP,,,,scpipe,,,,斯克兰,,,,屏幕,,,,scrnaseq,,,,颈背,,,,scry,,,,sctensor,,,,sctgif,,,,砍伐,,,,seqcat,,,,芝麻,,,,setools,,,,sigfeature,,,,sigspack,,,,Singlecellmultimodal,,,,唱歌,,,,singscoreamlmutations,,,,激流回旋,,,,弹弓,,,,紧身,,,,快照,,,,Snphood,,,,空间,,,,空间Heatmap,,,,空间Libd,,,,飞溅,,,,剪接效果,,,,Srnadiff,,,,结构,,,,switchde,,,,Systempiper,,,,tbsignatureprofiler,,,,tcgabiolinks,,,,tcgabiolinksgui,,,,tcgautils,,,,tcgaworkflow,,,,tcgaworkflowdata,,,,TCSEQ,,,,tenxplore,,,,tidybulk,,,,吐司,,,,码头,,,,topaseq,,,,有毒,,,,Tradeseq,,,,树木化的特殊性,,,,时髦的,,,,TSCAN,,,,TSCR,,,,tsrchitect,,,,ttmap,,,,TVTB,,,,tximeta,,,,变体滤波器,,,,vidger,,,,WPM,,,,XCMS,,,,Zellkonverter,,,,ZFPKM
建议我 AnnotationHub,,,,生物室,,,,Biotmledata,,,,CageWorkFlow,,,,策展adipoArray,,,,dcanr,,,,dearseq,,,,延迟,,,,多萝西娅,,,,DuoClustering2018,,,,EDGER,,,,ENMCB,,,,epivizr,,,,epivizrchart,,,,Esetvis,,,,Genie3,,,,基因组机,,,,Globalseq,,,,GSEAN,,,,HDF5Array,,,,信息,,,,InteractiveSplay,,,,矩阵,,,,MOFA2,,,,MSNBase,,,,Pathwaypca,,,,podkat,,,,PubScore,,,,rforpoteomics,,,,肋骨蛋白,,,,S4VECTORS,,,,sbgnview.data,,,,scfeaturefilter,,,,半条,,,,结构视频隔离,,,,tfutils,,,,组织
链接到我
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

源包 SummarizedExperiment_1.21.1.tar.gz
Windows二进制 总结Exexperiment_1.21.1.zip
MacOS 10.13(高山脉) 总结Exexperiment_1.21.1.tgz
源存储库 git克隆https://git.bioconductor.org/packages/summarizeexperiment
源存储库(开发人员访问) git clone git@git.bioconductor.org:packages/摘要excperiment
包装短URL //www.andersvercelli.com/packages/summarizeexperiment/
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