DominoEffect

DOI:10.18129/B9.bioc.DominoEffect

This is thedevelopmentversion of DominoEffect; for the stable release version, seeDominoEffect.

Identification and Annotation of Protein Hotspot Residues

Bioconductor version: Development (3.16)

The functions support identification and annotation of hotspot residues in proteins. These are individual amino acids that accumulate mutations at a much higher rate than their surrounding regions.

Author: Marija Buljan and Peter Blattmann

Maintainer: Marija Buljan , Peter Blattmann

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("DominoEffect")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("DominoEffect")

HTML	R Script	Vignette for DominoEffect package
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment,Proteomics,SequenceMatching,Software,SomaticMutation
Version	1.17.0
In Bioconductor since	BioC 3.7 (R-3.5) (4 years)
License	GPL (>= 3)
Depends	R (>= 3.5)
Imports	biomaRt,data.table, utils, stats,Biostrings,SummarizedExperiment,VariantAnnotation,AnnotationDbi,GenomeInfoDb,IRanges,GenomicRanges, methods
LinkingTo
Suggests	knitr,testthat,rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	DominoEffect_1.17.0.tar.gz
Windows Binary	DominoEffect_1.17.0.zip(64-bit only)
macOS 10.13 (High Sierra)	DominoEffect_1.17.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DominoEffect
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DominoEffect
Package Short Url	//www.andersvercelli.com/packages/DominoEffect/
Package Downloads Report	Download Stats