beadarray

DOI:10.18129/B9.bioc.beadarray

This is thedevelopmentversion of beadarray; for the stable release version, seebeadarray.

Quality assessment and low-level analysis for Illumina BeadArray data

Bioconductor version: Development (3.16)

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie

维护人员:马克邓宁< m.j。邓宁谢菲尔德.ac.uk>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("beadarray")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("beadarray")

PDF	R Script	beadarray.pdf
PDF	R Script	beadlevel.pdf
PDF	R Script	beadsummary.pdf
PDF	R Script	ImageProcessing.pdf
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Microarray,OneChannel,Preprocessing,QualityControl,Software
Version	2.47.0
In Bioconductor since	BioC 1.8 (R-2.3) (16 years)
License	MIT + fileLICENSE
Depends	R (>= 2.13.0),BiocGenerics(>= 0.3.2),Biobase(>= 2.17.8),hexbin
Imports	BeadDataPackR,limma,AnnotationDbi, stats4,reshape2,GenomicRanges,IRanges,illuminaio, methods,ggplot2
LinkingTo
Suggests	lumi,vsn,affy,hwriter,beadarrayExampleData,illuminaHumanv3.db,gridExtra,BiocStyle,TxDb.Hsapiens.UCSC.hg19.knownGene,ggbio,Nozzle.R1,knitr
SystemRequirements
Enhances
URL
Depends On Me	beadarrayExampleData
Imports Me	arrayQualityMetrics,BeadArrayUseCases,blima,epigenomix
Suggests Me	beadarraySNP,blimaTestingData,lumi
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	beadarray_2.47.0.tar.gz
Windows Binary	beadarray_2.47.0.zip(64-bit only)
macOS 10.13 (High Sierra)	beadarray_2.47.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/beadarray
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/beadarray
Package Short Url	//www.andersvercelli.com/packages/beadarray/
Package Downloads Report	Download Stats