affycoretools

DOI:10.18129/B9.bioc.affycoretools

This is thedevelopmentversion of affycoretools; for the stable release version, seeaffycoretools.

Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Bioconductor version: Development (3.16)

Various wrapper functions that have been written to streamline the more common analyses that a core Biostatistician might see.

Author: James W. MacDonald

Maintainer: James W. MacDonald

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # The following initializes usage of Bioc devel BiocManager::install(version='devel') BiocManager::install("affycoretools")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("affycoretools")

HTML	R Script	Creating annotated output with \Biocpkg{affycoretools} and ReportingTools
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression,Microarray,OneChannel,ReportWriting,Software
Version	1.69.1
In Bioconductor since	BioC 1.8 (R-2.3) (16 years)
License	Artistic-2.0
Depends	Biobase, methods
Imports	affy,limma,GOstats,gcrma, splines,xtable,AnnotationDbi,ggplot2,gplots,oligoClasses,ReportingTools,hwriter,lattice,S4Vectors,edgeR,RSQLite,BiocGenerics,DBI,Glimma
LinkingTo
Suggests	affydata, hgfocuscdf,BiocStyle,knitr, hgu95av2.db,rgl,rmarkdown
SystemRequirements
Enhances
URL
Depends On Me	AgiMicroRna
Imports Me
Suggests Me	EnMCB
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	affycoretools_1.69.1.tar.gz
Windows Binary
macOS 10.13 (High Sierra)	affycoretools_1.69.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affycoretools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affycoretools
Package Short Url	//www.andersvercelli.com/packages/affycoretools/
Package Downloads Report	Download Stats