microbiome

DOI:10.18129/B9.bioc.microbiome

Microbiome Analytics

Bioconductor version: Release (3.16)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut]

Maintainer: Leo Lahti

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("microbiome")

For older versions of R, please refer to the appropriateBioconductor release.

Documentation

查看文档的版本包age installed in your system, start R and enter:

browseVignettes("microbiome")

HTML	R Script	microbiome R package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Metagenomics,Microbiome,Sequencing,Software,SystemsBiology
Version	1.20.0
In Bioconductor since	BioC 3.6 (R-3.4) (5 years)
License	BSD_2_clause + fileLICENSE
Depends	R (>= 3.6.0),phyloseq,ggplot2
Imports	Biostrings,compositions,dplyr,reshape2,Rtsne,scales, stats,tibble,tidyr, utils,vegan
LinkingTo
Suggests	BiocGenerics,BiocStyle,Cairo,knitr,rmarkdown,testthat
SystemRequirements
Enhances
URL	http://microbiome.github.io/microbiome
BugReports	https://github.com/microbiome/microbiome/issues
Depends On Me
Imports Me
Suggests Me	ANCOMBC
Links To Me
Build Report

Package Archives

Follow2021年欧洲杯比分预测 instructions to use this package in your R session.

Source Package	microbiome_1.20.0.tar.gz
Windows Binary	microbiome_1.20.0.zip
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/microbiome
Bioc Package Browser	https://code.bioconductor.org/browse/microbiome/
Package Short Url	//www.andersvercelli.com/packages/microbiome/
Package Downloads Report	Download Stats