要安装此软件包,请启动R并输入:

##尝试http://如果不支持https:// url不支持源(“ //www.andersvercelli.com/bioclite.r”)bioclite(“ annotationdbi”)

在大多数情况下,您根本不需要下载包装存档。

AnnotationDbi

该包适用于生物导体的2.9版;对于稳定的最新版本,请参阅AnnotationDbi

注释数据库接口

生物导体版本:2.9

使用SQLITE数据存储为注释数据包提供用户界面和数据库连接代码。

作者:Herve Pages,Marc Carlson,Seth Falcon,Nianhua Li

维护者:bioconductor.org>的生物导体套件维护器<维护器>

引用(从r内,输入引用(“ AnnotationDbi”)):

安装

要安装此软件包,请启动R并输入:

##尝试http://如果不支持https:// url不支持源(“ //www.andersvercelli.com/bioclite.r”)bioclite(“ annotationdbi”)

文档

要查看系统中安装此软件包的版本的文档,请启动R并输入:

Browsevignettes(“ AnnotationDbi”)

PDF AnnotationDbi.pdf
PDF makeprobepackage.pdf
PDF newschema.pdf
PDF sqlforge.pdf
PDF 参考手册

细节

生物浏览 注解,,,,基础设施,,,,软件
版本 1.16.19
在生物导体中 Bioc 2.1(R-2.6)(8。5年)
执照 艺术2.0
要看 r(> = 2.7.0),方法,utils,生物酶(> = 1.17.0)
进口 方法,utils,生物酶,,,,DBI,,,,rsqlite,,,,iranges
链接
建议 DBI(> = 0.2-4),rsqlite(> = 0.6-4),HGU95AV2.DB,,,,go.db,,,,Human.DB0,,,,HGU95AV2CDF,,,,org.sc.sgd.db,,,,org.at.tair.db,,,,副词,,,,kegg.db,,,,XML,,,,rcurl,,,,运行
系统要求
增强
URL
取决于我 A4base,,,,a4preproc,,,,Adme16cod.db,,,,ag.db,,,,AGCDF,,,,Angprobe,,,,注释,,,,AnnotationFuncs,,,,Anopheles.db0,,,,拟南芥。db0,,,,ATH1121501.DB,,,,ATH1121501CDF,,,,ATH1121501企业,,,,吸引,,,,大麦1CDF,,,,大麦1probe,,,,Bovine.db,,,,Bovine.db0,,,,bovinecdf,,,,,,,,bsubtiliscdf,,,,Bsubtilisprobe,,,,,,,,canine.db0,,,,canine2.db,,,,canine2cdf,,,,canine2probe,,,,caninecdf,,,,犬种,,,,类别,,,,celegans.db,,,,celeganscdf,,,,Celegansprobe,,,,Chicken.db,,,,Chicken.db0,,,,Chickencdf,,,,鸡肉企业,,,,黑猩猩DB0,,,,ChromheatMap,,,,柑橘类,,,,柑橘类,,,,Cottoncdf,,,,棉布,,,,CYP450CDF,,,,do.db,,,,drosgenome1.db,,,,drosgenome1cdf,,,,drosgenome1probe,,,,果蝇2.DB,,,,果蝇2CDF,,,,果蝇2企业,,,,ecoli2.db,,,,Ecoli2CDF,,,,ecoli2probe,,,,Ecoliasv2CDF,,,,ecoliasv2 probe,,,,ecolicdf,,,,ecolik12.db0,,,,生态型,,,,ecolisakai.db0,,,,Eisa,,,,fly.db0,,,,gahgu133a.db,,,,gahgu133probe,,,,gahgu133b.db,,,,gahgu133bprobe,,,,gahgu133plus2.db,,,,gahgu133plus2probe,,,,gahgu95av2.db,,,,gahgu95av2probe,,,,gahgu95b.db,,,,gahgu95bprobe,,,,gahgu95c.db,,,,gahgu95cprobe,,,,gahgu95d.db,,,,gahgu95dprobe,,,,gahgu95e.db,,,,gahgu95eprobe,,,,Gene2Pathway,,,,GenomicFeatures,,,,ggdata,,,,gghhumanmethcancerpanelv1.db,,,,go.db,,,,操功能,,,,goprofiles,,,,GP53CDF,,,,H10KCOD.DB,,,,H20KCOD.DB,,,,HCG110.DB,,,,HCG110CDF,,,,HCG110 Probe,,,,hgfocus.db,,,,HGFOCUSCDF,,,,hgfocusprobe,,,,HGU133A.DB,,,,HGU133A2.DB,,,,HGU133A2CDF,,,,HGU133A2Probe,,,,HGU133ACDF,,,,HGU133PROBE,,,,HGU133ATAGCDF,,,,HGU133ATAGPROBE,,,,HGU133B.DB,,,,HGU133BCDF,,,,HGU133BPROBE,,,,hgu133plus2.db,,,,HGU133PLUS2CDF,,,,HGU133PLUS2Probe,,,,HGU219.DB,,,,HGU219CDF,,,,HGU219 Probe,,,,HGU95A.DB,,,,HGU95ACDF,,,,HGU95PROBE,,,,HGU95AV2.DB,,,,HGU95AV2CDF,,,,HGU95AV2Probe,,,,HGU95B.DB,,,,HGU95BCDF,,,,HGU95BPROBE,,,,HGU95C.DB,,,,HGU95CCDF,,,,HGU95CPROBE,,,,HGU95D.DB,,,,HGU95DCDF,,,,HGU95DPROBE,,,,hgu95e.db,,,,HGU95ECDF,,,,HGU95 EPROBE,,,,hguatlas13k.db,,,,hgubeta7.db,,,,hgudkfz31.db,,,,hgug4100a.db,,,,hgug4101a.db,,,,hgug4110b.db,,,,hgug4111a.db,,,,hgug4112a.db,,,,hguqiagenv3.db,,,,hi16cod.db,,,,HIVPRTPLUS2CDF,,,,hom.at.inp.db,,,,hom.ce.inp.db,,,,hom.dm.inp.db,,,,hom.dr.inp.db,,,,hom.hs.inp.db,,,,hom.mm.inp.db,,,,hom.rn.inp.db,,,,hom.sc.inp.db,,,,HS25KResogen.db,,,,HS6UG171.DB,,,,hsagilentdesign026652.db,,,,hthgu133a.db,,,,hthgu133acdf,,,,Hthgu133 aprobe,,,,hthgu133b.db,,,,HTHGU133BCDF,,,,hthgu133bprobe,,,,hthgu133pluspmcdf,,,,hthgu133pluspmprobe,,,,HTMG430ACDF,,,,htmg430 aprobe,,,,HTMG430BCDF,,,,htmg430bprobe,,,,HTMG430PMCDF,,,,HTMG430PMPROBE,,,,HTRAT230PMCDF,,,,HTRAT230PMPROBE,,,,htratfocuscdf,,,,htratfocusprobe,,,,hu35kkuba.db,,,,HU35KSUBACDF,,,,Hu35Ksubaprobe,,,,hu35ksubb.db,,,,HU35KSUBBCDF,,,,HU35KSUBBPROBE,,,,hu35ksubc.db,,,,HU35KSUBCCDF,,,,HU35KSUBCPROBE,,,,hu35ksubd.db,,,,HU35KSUBDCDF,,,,HU35KSUBDPROBE,,,,Hu6800.db,,,,HU6800CDF,,,,HU6800企业,,,,HU6800SUBACDF,,,,HU6800SUBBCDF,,,,HU6800SUBCCDF,,,,Hu6800subdcdf,,,,HuexexonProbeSetLocation,,,,huexexonprobesetlocationhg18,,,,huexexonprobesetlocationhg19,,,,Hugene10stprobeset.db,,,,hugene10sttranscriptcluster.db,,,,Hugene10STV1CDF,,,,Hugene10STV1 Probe,,,,hugene11stprobeset.db,,,,hugene11sttranscriptcluster.db,,,,Human.DB0,,,,huo22.db,,,,hwgcod.db,,,,Illuminahumanmethylation27K.DB,,,,Illuminahumanmethylation450k.db,,,,Illuminahumanmethylation450kprobe,,,,Illuminahumanv1.db,,,,Illuminahumanv2.db,,,,Illuminahumanv2beadid.db,,,,Illuminahumanv3.db,,,,Illuminahumanv4.db,,,,Illuminahumanwgdaslv3.db,,,,Illuminahumanwgdaslv4.db,,,,Illuminamousev1.db,,,,Illuminamousev1p1.db,,,,Illuminamousev2.db,,,,limuminaratv1.db,,,,indac.db,,,,jazaerimetadata.db,,,,kegg.db,,,,lapointe.db,,,,Lumihumanall.db,,,,Lumhumanidmapping,,,,Lumimimoseall.db,,,,LumimouseIdMapping,,,,Lumiratall.db,,,,LumiratidMapping,,,,m10kcod.db,,,,m20kcod.db,,,,maizecdf,,,,Maizeprobe,,,,疟疾.db0,,,,Medicagocdf,,,,医学探针,,,,mgu74a.db,,,,MGU74ACDF,,,,MGU74PAROBE,,,,mgu74av2.db,,,,MGU74AV2CDF,,,,mgu74av2probe,,,,mgu74b.db,,,,MGU74BCDF,,,,mgu74bprobe,,,,mgu74bv2.db,,,,MGU74BV2CDF,,,,MGU74BV2 Probe,,,,mgu74c.db,,,,MGU74CCDF,,,,mgu74cprobe,,,,mgu74cv2.db,,,,MGU74CV2CDF,,,,MGU74CV2 Probe,,,,mguatlas5k.db,,,,mgug4104a.db,,,,mgug4120a.db,,,,mgug4121a.db,,,,mgug4122a.db,,,,mi16cod.db,,,,mirbase.db,,,,miRNA102XGAINCDF,,,,miRNA10CDF,,,,mirna10probe,,,,miRNA20CDF,,,,MLP,,,,mm24kresogen.db,,,,mmagilentdesign026655.db,,,,Moe430a.db,,,,MOE430ACDF,,,,MOE430 40,,,,MOE430B.DB,,,,MOE430BCDF,,,,Moe430bprobe,,,,MoexexonProbeSetLocation,,,,mogene10stprobeset.db,,,,mogene10sttranscriptcluster.db,,,,mogene10stv1cdf,,,,mogene10stv1 probe,,,,mogene11stprobeset.db,,,,mogene11sttranscriptcluster.db,,,,Mouse.DB0,,,,鼠标4302.DB,,,,鼠标4302CDF,,,,Mouse4302 Probe,,,,鼠标430a2.db,,,,鼠标430A2CDF,,,,Mouse430a2 Probe,,,,mpedbarray.db,,,,mu11ksuba.db,,,,MU11KSUBACDF,,,,Mu11Ksubaprobe,,,,mu11ksubb.db,,,,MU11KSUBBCDF,,,,mu11ksubbprobe,,,,mu15v1.db,,,,mu19ksuba.db,,,,MU19KSUBACDF,,,,mu19ksubb.db,,,,MU19KSUBBCDF,,,,mu19ksubc.db,,,,MU19KSUBCCDF,,,,mu22v3.db,,,,MU6500SUBACDF,,,,MU6500SUBBCDF,,,,MU6500SUBCCDF,,,,MU6500SUBDCDF,,,,mwgcod.db,,,,挪威981.db,,,,Nugohs1a520180.db,,,,NUGOHS1A520180POROBE,,,,nugomm1a520177.db,,,,Nugomm1A520177企业,,,,ONTOTOOLS,,,,Operonhumanv3.db,,,,org.ag.eg.db,,,,org.at.tair.db,,,,org.bt.eg.db,,,,org.ce.eg.db,,,,org.cf.eg.db,,,,org.dm.eg.db,,,,org.dr.eg.db,,,,org.eck12.eg.db,,,,org.ecsakai.eg.db,,,,org.gg.eg.db,,,,org.hs.eg.db,,,,org.hs.ipi.db,,,,org.mm.eg.db,,,,org.mmu.eg.db,,,,org.pf.plasmo.db,,,,org.pt.eg.db,,,,org.rn.eg.db,,,,org.sc.sgd.db,,,,org.sco.eg.db,,,,org.ss.eg.db,,,,org.xl.eg.db,,,,paeg1acdf,,,,paeg1aprobe,,,,Pannbuilder,,,,PartheenMetadata.db,,,,Pathrender,,,,PEDBARRAYV10.DB,,,,PEDBARRAYV9.DB,,,,pfam.db,,,,PGSEA,,,,pig.db0,,,,疟原虫,,,,疟原虫plobe,,,,pocrcannotation.db,,,,poplarcdf,,,,poplarprobe,,,,,,,,Porcinecdf,,,,猪probe,,,,r10kcod.db,,,,rae230a.db,,,,RAE230ACDF,,,,Rae230 aprobe,,,,rae230b.db,,,,RAE230BCDF,,,,RAE230BPROBE,,,,RAEXEXONPROBESETLOCATION,,,,ragene10stprobeset.db,,,,ragene10sttranscriptcluster.db,,,,ragene10stv1cdf,,,,Ragene10STV1 Probe,,,,ragene11stprobeset.db,,,,ragene11sttranscriptcluster.db,,,,rat.db0,,,,RAT2302.DB,,,,RAT2302CDF,,,,RAT2302 Probe,,,,rattoxfxcdf,,,,Rattoxfxprobe,,,,Reactome.db,,,,Resourcerer,,,,rgu34a.db,,,,RGU34ACDF,,,,RGU34PROBE,,,,rgu34b.db,,,,RGU34BCDF,,,,RGU34BPROBE,,,,rgu34c.db,,,,RGU34CCDF,,,,RGU34CPROBE,,,,rguatlas4k.db,,,,RGUG4105A.DB,,,,rgug4130a.db,,,,RGUG4131A.DB,,,,Rhesus.db0,,,,Rhesuscdf,,,,Rhesusprobe,,,,ri16cod.db,,,,ricecdf,,,,水稻特色,,,,rnagilentdesign028282.db,,,,rnu34.db,,,,RNU34CDF,,,,RNU34Probe,,,,Roberts2005 Annotation.db,,,,rpsixml,,,,rtu34.db,,,,RTU34CDF,,,,RTU34Probe,,,,rwgcod.db,,,,saureuscdf,,,,Saureusprobe,,,,shdz.db,,,,大豆,,,,大豆店,,,,Sugarcanecdf,,,,糖caneprobe,,,,targetscan.hs.eg.db,,,,targetscan.mm.eg.db,,,,test1cdf,,,,test2cdf,,,,test3cdf,,,,test3probe,,,,tineath1probe,,,,tomatocdf,,,,小探针,,,,topgo,,,,U133AAOFAV2CDF,,,,U133x3p.db,,,,U133X3PCDF,,,,U133x3pprobe,,,,变体,,,,Vitisviniferacdf,,,,Vitisviniferaprobe,,,,小麦,,,,小麦企业,,,,worm.db0,,,,Xenopus.db0,,,,Xenopuslaeviscdf,,,,Xenopuslaevisprobe,,,,xlaevis.db,,,,XLAEVIS2CDF,,,,XLAEVIS2Probe,,,,Xtropicaliscdf,,,,Xtropicalisprobe,,,,YE6100SUBACDF,,,,YE6100SUBBCDF,,,,YE6100SUBCCDF,,,,ye6100subdcdf,,,,酵母。DB0,,,,酵母2.DB,,,,酵母2CDF,,,,酵母菌2企业,,,,YGS98.DB,,,,YGS98CDF,,,,YGS98Probe,,,,Zebrafish.db,,,,Zebrafish.db0,,,,斑马鱼,,,,斑马鱼
进口我 Adme16cod.db,,,,adsplit,,,,Affycoretools,,,,ag.db,,,,安菲,,,,注释,,,,Anopheles.db0,,,,拟南芥。db0,,,,ATH1121501.DB,,,,吸引,,,,Beadarray,,,,Bionet,,,,Bovine.db,,,,Bovine.db0,,,,,,,,canine.db0,,,,canine2.db,,,,类别,,,,celegans.db,,,,Cheung2010,,,,Chicken.db,,,,Chicken.db0,,,,黑猩猩DB0,,,,Chippeakanno,,,,ChromheatMap,,,,clusterProfiler,,,,Cocitestats,,,,do.db,,,,域名,,,,剂量,,,,drosgenome1.db,,,,果蝇2.DB,,,,ecoli2.db,,,,ecolik12.db0,,,,ecolisakai.db0,,,,ExpressionView,,,,fly.db0,,,,gahgu133a.db,,,,gahgu133b.db,,,,gahgu133plus2.db,,,,gahgu95av2.db,,,,gahgu95b.db,,,,gahgu95c.db,,,,gahgu95d.db,,,,gahgu95e.db,,,,GeneFilter,,,,Geneplotter,,,,GGBASE,,,,gghhumanmethcancerpanelv1.db,,,,ggtools,,,,Globalancova,,,,全球测试,,,,go.db,,,,操功能,,,,Gosemsim,,,,Goseq,,,,gostats,,,,Gotools,,,,石墨,,,,gseabase,,,,H10KCOD.DB,,,,H20KCOD.DB,,,,HCG110.DB,,,,hgfocus.db,,,,HGU133A.DB,,,,HGU133A2.DB,,,,HGU133B.DB,,,,hgu133plus2.db,,,,HGU219.DB,,,,HGU95A.DB,,,,HGU95AV2.DB,,,,HGU95B.DB,,,,HGU95C.DB,,,,HGU95D.DB,,,,hgu95e.db,,,,hguatlas13k.db,,,,hgubeta7.db,,,,hgudkfz31.db,,,,hgug4100a.db,,,,hgug4101a.db,,,,hgug4110b.db,,,,hgug4111a.db,,,,hgug4112a.db,,,,hguqiagenv3.db,,,,hi16cod.db,,,,hom.at.inp.db,,,,hom.ce.inp.db,,,,hom.dm.inp.db,,,,hom.dr.inp.db,,,,hom.hs.inp.db,,,,hom.mm.inp.db,,,,hom.rn.inp.db,,,,hom.sc.inp.db,,,,HS25KResogen.db,,,,HS6UG171.DB,,,,hsagilentdesign026652.db,,,,hthgu133a.db,,,,hthgu133b.db,,,,HTSANALYZER,,,,hu35kkuba.db,,,,hu35ksubb.db,,,,hu35ksubc.db,,,,hu35ksubd.db,,,,Hu6800.db,,,,Hugene10stprobeset.db,,,,hugene10sttranscriptcluster.db,,,,hugene11stprobeset.db,,,,hugene11sttranscriptcluster.db,,,,Human.DB0,,,,huo22.db,,,,hwgcod.db,,,,Illuminahumanmethylation27K.DB,,,,Illuminahumanmethylation450k.db,,,,Illuminahumanv1.db,,,,Illuminahumanv2.db,,,,Illuminahumanv2beadid.db,,,,Illuminahumanv3.db,,,,Illuminahumanv4.db,,,,Illuminahumanwgdaslv3.db,,,,Illuminahumanwgdaslv4.db,,,,Illuminamousev1.db,,,,Illuminamousev1p1.db,,,,Illuminamousev2.db,,,,limuminaratv1.db,,,,indac.db,,,,jazaerimetadata.db,,,,kegg.db,,,,Keggorthology,,,,lapointe.db,,,,Lumi,,,,Lumihumanall.db,,,,Lumhumanidmapping,,,,Lumimimoseall.db,,,,LumimouseIdMapping,,,,Lumiratall.db,,,,LumiratidMapping,,,,m10kcod.db,,,,m20kcod.db,,,,疟疾.db0,,,,甲基菌,,,,mgu74a.db,,,,mgu74av2.db,,,,mgu74b.db,,,,mgu74bv2.db,,,,mgu74c.db,,,,mgu74cv2.db,,,,mguatlas5k.db,,,,mgug4104a.db,,,,mgug4120a.db,,,,mgug4121a.db,,,,mgug4122a.db,,,,mi16cod.db,,,,mirbase.db,,,,mm24kresogen.db,,,,mmagilentdesign026655.db,,,,Moe430a.db,,,,MOE430B.DB,,,,mogene10stprobeset.db,,,,mogene10sttranscriptcluster.db,,,,mogene11stprobeset.db,,,,mogene11sttranscriptcluster.db,,,,Mouse.DB0,,,,鼠标4302.DB,,,,鼠标430a2.db,,,,mpedbarray.db,,,,mu11ksuba.db,,,,mu11ksubb.db,,,,mu15v1.db,,,,mu19ksuba.db,,,,mu19ksubb.db,,,,mu19ksubc.db,,,,mu22v3.db,,,,mwgcod.db,,,,挪威981.db,,,,Nugohs1a520180.db,,,,nugomm1a520177.db,,,,Operonhumanv3.db,,,,org.ag.eg.db,,,,org.at.tair.db,,,,org.bt.eg.db,,,,org.ce.eg.db,,,,org.cf.eg.db,,,,org.dm.eg.db,,,,org.dr.eg.db,,,,org.eck12.eg.db,,,,org.ecsakai.eg.db,,,,org.gg.eg.db,,,,org.hs.eg.db,,,,org.hs.ipi.db,,,,org.mm.eg.db,,,,org.mmu.eg.db,,,,org.pf.plasmo.db,,,,org.pt.eg.db,,,,org.rn.eg.db,,,,org.sc.sgd.db,,,,org.sco.eg.db,,,,org.ss.eg.db,,,,org.xl.eg.db,,,,Pannbuilder,,,,PartheenMetadata.db,,,,患者生长,,,,PCPHENO,,,,PEDBARRAYV10.DB,,,,PEDBARRAYV9.DB,,,,pfam.db,,,,,,,,pig.db0,,,,pocrcannotation.db,,,,,,,,qpgraph,,,,r10kcod.db,,,,rae230a.db,,,,rae230b.db,,,,ragene10stprobeset.db,,,,ragene10sttranscriptcluster.db,,,,ragene11stprobeset.db,,,,ragene11sttranscriptcluster.db,,,,rat.db0,,,,RAT2302.DB,,,,Reactome.db,,,,redseq,,,,rgu34a.db,,,,rgu34b.db,,,,rgu34c.db,,,,rguatlas4k.db,,,,RGUG4105A.DB,,,,rgug4130a.db,,,,RGUG4131A.DB,,,,Rhesus.db0,,,,ri16cod.db,,,,rmir​​.hs.mirna,,,,rmir​​.hsa,,,,rnagilentdesign028282.db,,,,rnu34.db,,,,Roberts2005 Annotation.db,,,,rtu34.db,,,,rwgcod.db,,,,安全的,,,,Scisi,,,,shdz.db,,,,Slgi,,,,targetscan.hs.eg.db,,,,targetscan.mm.eg.db,,,,蒂格,,,,topgo,,,,txdb.Athaliana.biomart.plantsmart10,,,,txdb.celegans.ucsc.ce6.ensgene,,,,txdb.dmelanogaster.ucsc.dm3.ensgene,,,,txdb.hsapiens.ucsc.hg18.nown,,,,txdb.hsapiens.ucsc.hg19,,,,txdb.mmusculus.ucsc.mm9,,,,txdb.rnorvegicus.ucsc.rn4.ensgene,,,,txdb.scerevisiae.ucsc.saccer2.ensgene,,,,txdb.scerevisiae.ucsc.saccer2.sgdgene,,,,U133x3p.db,,,,变体,,,,worm.db0,,,,Xenopus.db0,,,,xlaevis.db,,,,酵母。DB0,,,,酵母2.DB,,,,YGS98.DB,,,,Zebrafish.db,,,,Zebrafish.db0
建议我 生物探测,,,,ExpressionView,,,,Geneanswers,,,,Generegionscan,,,,mmpalatemirna,,,,Onechannelgui,,,,Sigpathway
构建报告

包装档案

跟随2021年欧洲杯比分预测 在R会话中使用此软件包的说明。

包源 AnnotationDbi_1.16.19.tar.gz
Windows二进制 AnnotationDbi_1.16.19.zip
Mac OS X 10.6(雪豹)
Mac OS X 10.9(Mavericks)
颠覆源 (用户名/密码:ReadOnly)
git源 https://github.com/bioconductor-mirror/annotationdbi/tree/release-2.9
包装短URL //www.andersvercelli.com/packages/annotationdbi/
软件包下载报告 下载统计

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弗雷德·哈钦森癌症研究中心