# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #运行命令:# # # # # # /home/biocbuild/bbs - 3.16 - bioc R / R / bin / CMD检查——安装=检查:miRNAtap.install-out。txt -库= / home / biocbuild / bbs - 3.16 bioc / R / site-library——计时miRNAtap_1.32.0.tar.gz### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-bioc/meat/miRNAtap.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘miRNAtap/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘miRNAtap’ version ‘1.32.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘miRNAtap’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE 'library' or 'require' call to ‘miRNAtap.db’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE getTargetsFromSource: no visible binding for global variable ‘miRNAtap.db’ getTargetsFromSource : : no visible binding for global variable ‘miRNAtap.db’ translate: no visible binding for global variable ‘miRNAtap.db’ Undefined global functions or variables: miRNAtap.db * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘miRNAtap.Rnw’ using ‘UTF-8’... OK OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.16-bioc/meat/miRNAtap.Rcheck/00check.log’ for details.

# # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # #运行命令:# # # # # # /home/biocbuild/bbs - 3.16 - bioc R / R / bin / CMD安装miRNAtap # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # # *安装库的/ home / biocbuild / bbs - 3.16 - bioc / R / site-library ' *源代码安装* *包“miRNAtap”……* *使用了安装* * R * * byte-compile和准备延迟加载包* *帮助安装帮助指数* * * * *构建包安装小插曲指数* * * *测试如果安装包可以从临时位置* *加载测试如果安装包可以从最终位置* *加载测试如果安装包保存记录的临时安装路径* (miRNAtap)完成

R版本4.2.3(2023-03-15)——“游击手小猎犬”版权(C) 2023 R统计计算平台:基金会x86_64-pc-linux-gnu(64位)R是免费软件,绝对没有保修。欢迎您重新分配它在特定条件下。类型的许可证()”或“许可证()”分布的细节。与许多贡献者R是一个合作项目。类型的贡献者()的更多信息和引用()的引用或R包出版物。类型的演示()对于一些演示,对联机帮助的帮助()”,或“help.start()的HTML浏览器接口来帮助。类型的q()退出r >库(testthat) >库(miRNAtap)加载所需的包:AnnotationDbi加载所需的包:stats4加载所需的包:BiocGenerics附加包:“BiocGenerics”以下对象从“包:统计”:蒙面差,疯了,sd, var, xtabs蒙面以下对象从“包:基地”:过滤器,发现,地图,位置,减少,anyDuplicated, aperm,追加,as.data.frame, basename, cbind colnames,目录名,做。电话,重复,eval, evalq, grep, grepl,相交,是。无序、拉普兰人、宾州、匹配mget,秩序,粘贴,pmax, pmax.int, pmin, pmin.int,排名,rbind, rownames,酸式焦磷酸钠,setdiff,排序,表,tapply,联盟,独特的,不可分割的,。马克斯,。分钟加载所需的包:Biobase欢迎Bioconductor片段包含介绍性的材料;视图与“browseVignettes ()”。 To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: IRanges Loading required package: S4Vectors Attaching package: 'S4Vectors' The following objects are masked from 'package:base': I, expand.grid, unname > > test_check("miRNAtap") [ FAIL 0 | WARN 3 | SKIP 0 | PASS 12 ] [ FAIL 0 | WARN 3 | SKIP 0 | PASS 12 ] > > proc.time() user system elapsed 8.923 1.026 9.936