# #——global_options,包括= FALSE -------------------------------------------- 美元knitr: opts_chunk设置(图。Pos = 'h') doc_dir <- getwd() ##在临时目录下运行所有代码knitr::opts_knit$set(root. py)dir = tempdir ()) ## ---- packageInstallation eval = FALSE ---------------------------------------- # 如果(!“BiocManager”% % rownames (installed.packages ())) # install.packages (BiocManager) # BiocManager::安装(“BiocWorkflowTools ") ## ---- createBiocWorkflow、消息= FALSE ---------------------------------------- workflow_location < file.path (tempdir(),“MyWorkflow”)BiocWorkflowTools:: createBiocWorkflow (= workflow_location道路,## ----RStudioNew, echo = FALSE, out。width='50%'， fig.align='center'， fig.cap=" RStudio中集成了新文章的创建。F1000Research模板可以通过访问新的R减价文件菜单对话框”——knitr: include_graphics(“数据/ Rstudio_newdoc.png”、错误= FALSE) # #——createDraft -------------------------------------------------------------- rmd_file < - rmarkdown::(“MyArticle草案。限制型心肌病”,模板= " f1000_article”,包= " BiocWorkflowTools”,编辑= FALSE) # #——呈现,eval = FALSE ----------------------------------------------------- # rmarkdown:渲染(rmd_file) # #——renderquiet,包括= FALSE --------------------------------------------- rmarkdown::渲染(rmd_file安静= TRUE) # #——uploadToOverleaf,eval = FALSE --------------------------------------------- # BiocWorkflowTools:: uploadToOverleaf(“MyArticle”)