ndexr 1.19.1 (Bioconductor Release 3.16) = = = = = = = = = = = * *更新:使用RCX包处理网络。* * * *已经功能:* * * * rcx_fromJSON: *“RCX: readJSON’() * * rcx_toJSON: *“RCX: toCX’() * * rcx_aspect_toJSON: *“rcx_aspect_toJSON”* * rcx_new: *“RCX: createRCX’() * * rcx_asNewNetwork: *“RCX: createRCX’() * * rcx_updateMetaData: *“RCX: updateMetaData’() * *打印。RCX: * RCX:: print.RCX()的* * rcx_toRCXgraph: *“RCX: toIgraph()的* * rcxgraph_toRCX *”RCX: fromIgraph ()“ndexr 1.17.0 (Bioconductor Release 3.15) = = = = = = = = = = = * *更新:使用RCX包处理网络。* * * *弃用功能:* * * * rcx_fromJSON: *“RCX: readJSON’() * * rcx_toJSON: *“RCX: toCX’() * * rcx_aspect_toJSON: *“rcx_aspect_toJSON”* * rcx_new: *“RCX: createRCX’() * * rcx_asNewNetwork: *“RCX: createRCX’() * * rcx_updateMetaData: *“RCX: updateMetaData’() * *打印。RCX: * RCX:: print.RCX()的* * rcx_toRCXgraph: *“RCX: toIgraph()的* * rcxgraph_toRCX *”RCX: fromIgraph ()“ndexr 1.1.7 (Bioconductor Release 3.7) = = = = = = = = = = = *修复:错误RCX = > RCXgraph = > RCX转换*修复:NDEx网络中服务器更新返回列清单,汇总和元数据;元数据也不再嵌套*修复:测试坠毁,因为缺少网络;使用UUID更新新版本的公共从ndextutorials *排除. .从git Rcheck;添加“ndexr”用户代理头*修复:构建错误造成的元数据:属性目前可选*更新:小修正由于ndex服务器更新。添加api ndex server version 2.2 ndexr 1.1.2 = = = = = = = = = = = * *突发变化的类和函数的名字!* * * * * * NGraph改名为* * RCXgraph * *,以避免命名Disambiguities !* *弃用功能:* * * * * * * rcx_toRCXgraph rcxgraph_fromRCX * * * rcxgraph_toRCX * * * rcx_fromRCXgraph *因此,新的职能之一被称为:* * * * * rcx_toRCXgraph rcxgraph_fromRCX * * * rcxgraph_toRCX * * * rcx_fromRCXgraph * ndexr 0.99.10 = = = = = = = = = = = *的命名功能:点是被强调,这样的功能可能不是与S3混淆的方法。命名约定本身不会改变! E.g. the new name of the function "ndex.network.update.aspect" is now "ndex_network_update_aspect" * Moved packages httr, jsonlite, plyr and tidyr from "Depends" field to "Imports" (Import into NAMESPACE not necessary, because external package function names are always explicitly qualified) * Fixed a bug in ngraph_fromRCX, which prevented the resulting ngraph object from node attributes to be set correctly. This also lead the following warnings: "Warning in vattrs[[name]][index] <- value : number of items to replace is not a multiple of replacement length" * Changed functions from passing a quoted string (e.g. host = "ndexConf$connection$host") as default parameter to using the actual object (e.g. host = ndexConf$connection$host) * Made some minor changes to NDExConnection object; removed an undesired warning. * Implement a print method for the classes "NDExConnection" and "RCX" to provide the user with a useful summary of this complicated object * changed to the usage of message() rather than cat() for verbose outputs, where it wasn't already done * Specified a single 'Maintainer' representing the primary contact for maintenance issues related to this package. * Removed the .gitignore file from this directory * Changed installation instructions in the vignette to Bioconductor ndexr 0.99.0 =========== * Pushing version number to 0.99.0 according to Bioconductor checklist * Initial submission to Bioconductor